Package picard.filter

Class CountingMapQFilter

  • All Implemented Interfaces:
    htsjdk.samtools.filter.SamRecordFilter

    public class CountingMapQFilter
    extends CountingFilter
    Counting filter that discards reads below a configurable mapping quality threshold.
    • Constructor Detail

      • CountingMapQFilter

        public CountingMapQFilter​(int minMapq)
    • Method Detail

      • reallyFilterOut

        public boolean reallyFilterOut​(htsjdk.samtools.SAMRecord record)
        Description copied from class: CountingFilter
        Return true if we are to filter this record out, false otherwise.
        Specified by:
        reallyFilterOut in class CountingFilter