Package picard.vcf
Class ByIntervalListVariantContextIterator
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- picard.vcf.ByIntervalListVariantContextIterator
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- All Implemented Interfaces:
Iterator<htsjdk.variant.variantcontext.VariantContext>
public class ByIntervalListVariantContextIterator extends Object implements Iterator<htsjdk.variant.variantcontext.VariantContext>
Takes a VCFFileReader and an IntervalList and provides a single iterator over all variants in all the intervals. //TODO Currently this uses the VCFFileReader.query method - could be useful to make a version of this iterator that uses the .iterator method
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Constructor Summary
Constructors Constructor Description ByIntervalListVariantContextIterator(htsjdk.variant.vcf.VCFFileReader reader, htsjdk.samtools.util.IntervalList intervals)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description boolean
hasNext()
htsjdk.variant.variantcontext.VariantContext
next()
void
remove()
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Methods inherited from interface java.util.Iterator
forEachRemaining
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