Package picard.vcf
Enum GenotypeConcordanceStateCodes
- java.lang.Object
-
- java.lang.Enum<GenotypeConcordanceStateCodes>
-
- picard.vcf.GenotypeConcordanceStateCodes
-
- All Implemented Interfaces:
Serializable
,Comparable<GenotypeConcordanceStateCodes>
public enum GenotypeConcordanceStateCodes extends Enum<GenotypeConcordanceStateCodes>
Created by kbergin on 7/30/15.
-
-
Enum Constant Summary
Enum Constants Enum Constant Description GT_FILTERED_CODE
HET_REF_VAR1_CODE
HET_VAR1_VAR2_CODE
HOM_REF_CODE
HOM_VAR1_CODE
INCOMPARABLE_CODE
IS_MIXED_CODE
LOW_DP_CODE
LOW_GQ_CODE
MISSING_CODE
These codes allow for constants in the truth state enum and the call state enum to be compared.NO_CALL_CODE
VC_FILTERED_CODE
-
Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static GenotypeConcordanceStateCodes
valueOf(String name)
Returns the enum constant of this type with the specified name.static GenotypeConcordanceStateCodes[]
values()
Returns an array containing the constants of this enum type, in the order they are declared.
-
-
-
Enum Constant Detail
-
MISSING_CODE
public static final GenotypeConcordanceStateCodes MISSING_CODE
These codes allow for constants in the truth state enum and the call state enum to be compared. The final INCOMPARABLE_CODE is for Call States that are not reflected in the Truth State, so they can never match.
-
HOM_REF_CODE
public static final GenotypeConcordanceStateCodes HOM_REF_CODE
-
HET_REF_VAR1_CODE
public static final GenotypeConcordanceStateCodes HET_REF_VAR1_CODE
-
HET_VAR1_VAR2_CODE
public static final GenotypeConcordanceStateCodes HET_VAR1_VAR2_CODE
-
HOM_VAR1_CODE
public static final GenotypeConcordanceStateCodes HOM_VAR1_CODE
-
NO_CALL_CODE
public static final GenotypeConcordanceStateCodes NO_CALL_CODE
-
LOW_GQ_CODE
public static final GenotypeConcordanceStateCodes LOW_GQ_CODE
-
LOW_DP_CODE
public static final GenotypeConcordanceStateCodes LOW_DP_CODE
-
VC_FILTERED_CODE
public static final GenotypeConcordanceStateCodes VC_FILTERED_CODE
-
GT_FILTERED_CODE
public static final GenotypeConcordanceStateCodes GT_FILTERED_CODE
-
IS_MIXED_CODE
public static final GenotypeConcordanceStateCodes IS_MIXED_CODE
-
INCOMPARABLE_CODE
public static final GenotypeConcordanceStateCodes INCOMPARABLE_CODE
-
-
Method Detail
-
values
public static GenotypeConcordanceStateCodes[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:for (GenotypeConcordanceStateCodes c : GenotypeConcordanceStateCodes.values()) System.out.println(c);
- Returns:
- an array containing the constants of this enum type, in the order they are declared
-
valueOf
public static GenotypeConcordanceStateCodes valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is null
-
-