Package picard.sam

Class SamFormatConverter


  • @DocumentedFeature
    public class SamFormatConverter
    extends CommandLineProgram
    Converts a BAM file to human-readable SAM output or vice versa
    • Field Detail

      • INPUT

        @Argument(doc="The BAM or SAM file to parse.",
                  shortName="I")
        public File INPUT
      • OUTPUT

        @Argument(doc="The BAM or SAM output file. ",
                  shortName="O")
        public File OUTPUT
    • Constructor Detail

      • SamFormatConverter

        public SamFormatConverter()
    • Method Detail

      • main

        public static void main​(String[] argv)
      • doWork

        protected int doWork()
        Description copied from class: CommandLineProgram
        Do the work after command line has been parsed. RuntimeException may be thrown by this method, and are reported appropriately.
        Specified by:
        doWork in class CommandLineProgram
        Returns:
        program exit status.